Faculty Information - 黒田　誠

Top page of Faculty introduction

Basic Information

Research Fields

Educational Background

Academic Achievements

Selected Publications

Selected Presentations

（Last updated : 2024-07-16 16:34:20）

黒田　誠
Department Kumamoto Health Science University Department of Medical Technology, Faculty of Health Science

Kumamoto Health Science University Graduate School Division of Health Sciences, Graduate School of Health Sciences

Position Professor

Basic Information

■ Research Fields

Bacteriology, Virology, Infectious disease medicine, System genome science

■ Educational Background

Graduate School of Comprehensive Human Sciences, University of Tsukuba

Academic Achievements

■ Selected Publications

1.	2024/04/11	Article	Complete genome sequence of Selenomonas species strain TAMA-11512, isolated from blood culture of a septic patient Microbiol Resour Announc. 13(4),pp.e0007024 (Collaboration)
2.	2024/04/05	Article	Development of a High-Throughput Analytical Method for Antimicrobials in Wastewater Using an Automated Pipetting and Solid-Phase Extraction System Antibiotics (Basel) 13(4),pp.335 (Collaboration)
3.	2024/03/22	Article	Rapid response to a COVID-19 outbreak at a nightclub in Kagoshima prefecture, Japan, in the early phase of the COVID-19 pandemic, June and July 2020: A descriptive epidemiological study J Infect Chemother . S1341-321X(24),pp.98-99 (Collaboration)
4.	2023/11/27	Article	Comparative pathogenomic analysis reveals a highly tetanus toxin-producing clade of Clostridium tetani isolates in Japan mSphere (Collaboration)
5.	2023/11/17	Article	Whole genome sequencing and pan-genome analysis of Staphylococcus/Mammaliicoccus spp. isolated from diabetic foot ulcers and contralateral healthy skin of Algerian patients BMC Microbiol (Collaboration)
6.	2023/11/01	Article	Impact of COVID-19 and closed transmission of SARS-CoV-2 during the first wave in Toyama Prefecture, Japan, March 30 to May 18, 2020 Jpn J Infect Dis (Collaboration)
7.	2023/10/28	Article	Pet Animals Were Infected with SARS-CoV-2 from Their Owners Who Developed COVID-19: Case Series Study Viruses (Collaboration)
8.	2023/10/03	Article	SARS-CoV-2 Infection in Wrestlers after International Tournaments, April 2021 Emerg Infect Dis (Collaboration)
9.	2023/09/28	Article	Molecular Evolutionary Analyses of the Spike Protein Gene and Spike Protein in the SARS-CoV-2 Omicron Subvariants Microorganisms (Collaboration)
10.	2023/08/31	Article	Transmission dynamics variability of lineage 2 Mycobacterium tuberculosis strains in Kobe, Japan, determined using population-based whole-genome sequencing analysis Infect Genet Evol (Collaboration)
11.	2023/08/04	Article	Genomic analysis of SARS-CoV-2 in forensic autopsy cases of COVID-19 J Med Virol (Collaboration)
12.	2023/07/26	Article	Rapid identification of bacteria using a multiplex polymerase chain reaction system for acute abdominal infections Front Microbiol (Collaboration)
13.	2023/07/20	Article	Outbreaks of Campylobacteriosis Caused by Drinking Raw Milk in Japan: Evidence of Relationship Between Milk and Patients by Using Whole Genome Sequencing Foodborne Pathog Dis (Collaboration)
14.	2023/07/11	Article	Multiplex Hybrid Capture Improves the Deep Detection of Antimicrobial Resistance Genes from Wastewater Treatment Plant Effluents to Assess Environmental Issues Microb Drug Resist (Collaboration)
15.	2023/05/27	Article	Performance of a Pilot-Scale Continuous Flow Ozone-Based Hospital Wastewater Treatment System Antibiotics (Basel) (Collaboration)
16.	2023/05/24	Article	Highly sensitive detection of antimicrobial resistance genes in hospital wastewater using the multiplex hybrid capture target enrichment mSphere (Collaboration)
17.	2023/05/05	Article	SARS-CoV-2 intra-host diversity, antibody response, and disease severity after reinfection by the variant of concern Gamma in Brazil Sci Rep (Collaboration)
18.	2023/05/03	Article	Complete Genome Sequence of Corynebacterium ulcerans Strain TSU-28, Harboring Two Diphtheria Toxin Genes, Isolated from a Patient with Diphtheria-Like Symptoms Microbiol Resour Announc (Collaboration)
19.	2023/03/06	Article	Antimicrobial resistance profiles of Campylobacter jejuni and Salmonella spp. isolated from enteritis patients in Japan J Vet Med Sci (Collaboration)
20.	2023/02/25	Article	Emergence of BS.1 and BS.1.1, highly mutated new SARS-CoV-2 Omicron variants J Med Virol (Collaboration)
21.	2022/10/27	Article	Comprehensive Genome and Plasmidome Analysis of Antimicrobial Resistant Bacteria in Wastewater Treatment Plant Effluent of Tokyo Antibiotics (Basel) (Collaboration)
22.	2022/09/08	Article	Independent evolution of multi-dominant viral genome species observed in a hepatitis C virus carrier Biochem Biophys Rep (Collaboration)
23.	2022/08/30	Article	Metagenomic Analysis of Urban Wastewater Treatment Plant Effluents in Tokyo Infect Drug Resist (Collaboration)
24.	2022/07/31	Article	Detection of SARS-CoV-2 Genome for over 100 Days after COVID-19 Onset Jpn J Infect Dis (Collaboration)
25.	2022/07/27	Article	Inactivation of Bacteria and Residual Antimicrobials in Hospital Wastewater by Ozone Treatment Antibiotics (Basel) (Collaboration)
26.	2022/05/09	Article	Singing Is a Risk Factor for Severe Acute Respiratory Syndrome Coronavirus 2 Infection: A Case-Control Study of Karaoke-Related Coronavirus Disease 2019 Outbreaks in 2 Cities in Hokkaido, Japan, Linked by Whole Genome Analysis Open Forum Infect Dis (Collaboration)
27.	2022/04/20	Article	Recombination between SARS-CoV-2 Omicron BA.1 and BA.2 variants identified in a traveller from Nepal at the airport quarantine facility in Japan J Travel Med (Collaboration)
28.	2022/02/26	Article	Epidemiology and Genetic Analysis of SARS-CoV-2 in Myanmar during the Community Outbreaks in 2020 Viruses (Collaboration)
29.	2022/02/22	Article	Correction to: Quick detection of causative bacteria in cases of acute cholangitis and cholecystitis using a multichannel gene autoanalyzer Surg Today (Collaboration)
30.	2022/01/07	Article	A lethal mouse model for evaluating vaccine-associated enhanced respiratory disease during SARS-CoV-2 infection Sci Adv (Collaboration)
31.	2021/12/24	Article	Antimicrobial Resistance in Salmonella Isolated from Food Workers and Chicken Products in Japan Antibiotics (Basel) (Collaboration)
32.	2021/12/13	Article	Corrigendum to: Phylogenetic Analysis Revealed the Dissemination of Closely Related Epidemic Vibrio cholerae O1 Isolates in Laos, Thailand, and Vietnam Open Forum Infect Dis (Collaboration)
33.	2021/11/15	Article	Genomic Epidemiology Reveals Multiple Introductions of Severe Acute Respiratory Syndrome Coronavirus 2 in Niigata City, Japan, Between February and May 2020 Front Microbiol (Collaboration)
34.	2021/10/04	Article	Transmission of SARS-CoV-2 during a 2-h domestic flight to Okinawa, Japan, March 2020 Influenza Other Respir Viruses (Collaboration)
35.	2021/09/21	Article	[SARS-CoV-2 genomics and its application to genome surveillance] Uirusu (Single)
36.	2021/09/11	Article	A SARS-CoV-2 antibody broadly neutralizes SARS-related coronaviruses and variants by coordinated recognition of a virus-vulnerable site Immunity (Collaboration)
37.	2021/08/13	Article	SARS-CoV-2 is localized in cardiomyocytes: a postmortem biopsy case Int J Infect Dis (Collaboration)
38.	2021/08/13	Article	Whole Genome Analysis Detects the Emergence of a Single Salmonella enterica Serovar Chester Clone in Japan's Kanto Region Front Microbiol (Collaboration)
39.	2021/08/12	Article	Characterization of FRI carbapenemase-producing Enterobacter spp. isolated from a hospital and the environment in Osaka, Japan J Antimicrob Chemother (Collaboration)
40.	2021/08/05	Article	A discernable increase in the severe acute respiratory syndrome coronavirus 2 R.1 lineage carrying an E484K spike protein mutation in Japan Infect Genet Evol (Collaboration)
41.	2021/08/04	Article	High attack rate of SARS-CoV-2 infections during a bus tour in Japan J Travel Med (Collaboration)
42.	2021/07/19	Article	Identification of a Recently Dominant Sublineage in Salmonella 4,[5],12:i:- Sequence Type 34 Isolated From Food Animals in Japan Front Microbiol (Collaboration)
43.	2021/07/13	Article	Quick detection of causative bacteria in cases of acute cholangitis and cholecystitis using a multichannel gene autoanalyzer Surg Today (Collaboration)
44.	2021/07/09	Article	Transmission of extended-spectrum cephalosporin-resistant Salmonella harboring a bla(CMY-2)-carrying IncA/C(2) plasmid chromosomally integrated by ISEcp1 or IS26 in layer breeding chains in Japan J Vet Med Sci (Collaboration)
45.	2021/06/02	Article	Identification of SYS1 as a Host Factor Required for Shiga Toxin-Mediated Cytotoxicity in Vero Cells Int J Mol Sci (Collaboration)
46.	2021/04/23	Article	Haplotype Explorer: an infection cluster visualization tool for spatiotemporal dissection of the COVID-19 pandemic G3 (Bethesda) (Collaboration)
47.	2021/03/22	Article	Vitronectin binding protein, BOM1093, confers serum resistance on Borrelia miyamotoi Sci Rep (Collaboration)
48.	2021/02/10	Article	Novel SARS-CoV-2 Variant in Travelers from Brazil to Japan Emerg Infect Dis (Collaboration)
49.	2021/01/23	Article	Emergence of the mcr-1 colistin resistance gene in extended-spectrum β-lactamase-producing Klebsiella pneumoniae in Taiwan J Glob Antimicrob Resist (Collaboration)
50.	2021/01/14	Article	A Potent anti-Simian Immunodeficiency Virus Neutralizing Antibody Induction Associated with a Germline Immunoglobulin Gene Polymorphism in Rhesus Macaques J Virol (Collaboration)
51.	2020/11/27	Article	Phylogenetic Analysis Revealed the Dissemination of Closely Related Epidemic Vibrio cholerae O1 Isolates in Laos, Thailand, and Vietnam Open Forum Infect Dis (Collaboration)
52.	2020/11/25	Article	COVID-19 genome surveillance at international airport quarantine stations in Japan J Travel Med (Collaboration)
53.	2020/11/19	Article	Dissemination of IncF group F1:A2:B20 plasmid-harbouring multidrug-resistant Escherichia coli ST131 before the acquisition of bla(CTX-M) in Japan J Glob Antimicrob Resist (Collaboration)
54.	2020/11/12	Article	A Genome Epidemiological Study of SARS-CoV-2 Introduction into Japan mSphere (Collaboration)
55.	2020/10/25	Article	First case of molecularly identified and genetically characterized human T-cell leukemia virus type 2 infection in a pregnant woman in non-endemic Japan J Virol Methods (Collaboration)
56.	2020/10/23	Article	Detailed Molecular Interactions of Favipiravir with SARS-CoV-2, SARS-CoV, MERS-CoV, and Influenza Virus Polymerases In Silico Microorganisms (Collaboration)
57.	2020/09/18	Article	Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR PLoS One (Collaboration)
58.	2020/09/18	Article	Limitations of Ribotyping as Genotyping Method for Corynebacterium ulcerans Emerg Infect Dis (Collaboration)
59.	2020/09/01	Article	Coinfection with Human Norovirus and Escherichia coli O25:H4 Harboring Two Chromosomal blaCTX-M-14 Genes in a Foodborne Norovirus Outbreak in Shizuoka Prefecture, Japan J Food Prot (Collaboration)
60.	2020/08/28	Article	Periodic Genotype Shifts in Clinically Prevalent Mycoplasma pneumoniae Strains in Japan Front Cell Infect Microbiol (Collaboration)
61.	2020/08/21	Article	Chromobacterium haemolyticum Pneumonia Associated with Near-Drowning and River Water, Japan Emerg Infect Dis (Collaboration)
62.	2020/08/07	Article	Isolation and plasmid characterisation of Salmonella enterica serovar Albany harbouring mcr-5 from retail chicken meat in Japan FEMS Microbiol Lett (Collaboration)
63.	2020/07/30	Article	Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak Proc Natl Acad Sci U S A (Collaboration)
64.	2020/06/26	Article	SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise Front Microbiol (Collaboration)
65.	2020/06/04	Article	Neurogenic pulmonary edema following febrile status epilepticus in a 22-month-old infant with multiple respiratory virus co-detection: a case report BMC Infect Dis (Collaboration)
66.	2020/06/03	Article	Meningitis and bacteremia by nonhemolytic Group B Streptococcus strain: A whole genome analysis Microbiol Immunol (Collaboration)
67.	2020/05/16	Article	Clinicopathologic and Immunohistochemical Findings from Autopsy of Patient with COVID-19, Japan Emerg Infect Dis (Collaboration)
68.	2020/05/13	Article	Molecular evolution of the capsid (VP1) region in human norovirus genogroup II genotype 3 Heliyon (Collaboration)
69.	2020/05/06	Article	Comparative Genomic Analysis of Third-Generation-Cephalosporin-Resistant Escherichia coli Harboring the bla(CMY-2)-Positive IncI1 Group, IncB/O/K/Z, and IncC Plasmids Isolated from Healthy Broilers in Japan Antimicrob Agents Chemother (Collaboration)
70.	2020/04/24	Article	High expression of JC polyomavirus-encoded microRNAs in progressive multifocal leukoencephalopathy tissues and its repressive role in virus replication PLoS Pathog (Collaboration)
71.	2020/04/18	Article	Bacterial population kinetics in heteroresistant Mycobacterium tuberculosis harbouring rare resistance-conferring mutations in gyrA and rpoB imply an epistatic interaction of mutations in a pre-XDR-TB patient J Antimicrob Chemother (Collaboration)
72.	2020/04/12	Article	Food Workers as a Reservoir of Extended-Spectrum-Cephalosporin-Resistant Salmonella Strains in Japan Appl Environ Microbiol (Collaboration)
73.	2020/03/14	Article	Enhanced isolation of SARS-CoV-2 by TMPRSS2-expressing cells Proc Natl Acad Sci U S A (Collaboration)
74.	2020/03/07	Article	A prolonged multispecies outbreak of IMP-6 carbapenemase-producing Enterobacterales due to horizontal transmission of the IncN plasmid Sci Rep (Collaboration)
75.	2020/02/29	Article	Characterization of the IncFII-IncFIB(pB171) Plasmid Carrying bla (NDM-5) in Escherichia coli ST405 Clinical Isolate in Japan Infect Drug Resist (Collaboration)
76.	2020/02/25	Article	Truncated Class 1 Integron Gene Cassette Arrays Contribute to Antimicrobial Resistance of Diarrheagenic Escherichia coli Biomed Res Int (Collaboration)
77.	2020/01/30	Article	Molecular Evolution of the Protease Region in Norovirus Genogroup II Front Microbiol (Collaboration)
78.	2019/12/20	Article	Candidatus Mycoplasma haemohominis in Human, Japan Emerg Infect Dis (Collaboration)
79.	2019/12/18	Article	Flagellum expression and swimming activity by the zoonotic pathogen Escherichia albertii Environ Microbiol Rep (Collaboration)
80.	2019/11/19	Article	High-throughput genotyping of a full voltage-gated sodium channel gene via genomic DNA using target capture sequencing and analytical pipeline MoNaS to discover novel insecticide resistance mutations (Collaboration)
81.	2019/11/15	Article	Complete genome and bimodal genomic structure of the amoebal symbiont Neochlamydia strain S13 revealed by ultra-long reads obtained from MinION J Hum Genet (Collaboration)
82.	2019/11/07	Article	Identification of a mecA/mecC-positive MRSA ST1-t127 isolate from a racehorse in Japan J Antimicrob Chemother (Collaboration)
83.	2019/11/01	Article	IMP-68, a Novel IMP-Type Metallo-β-Lactamase in Imipenem-Susceptible Klebsiella pneumoniae mSphere (Collaboration)
84.	2019/10/16	Article	Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 Front Microbiol (Collaboration)
85.	2019/10/12	Article	Epidemiological Aspects of Escherichia albertii Outbreaks in Japan and Genetic Characteristics of the Causative Pathogen Foodborne Pathog Dis (Collaboration)
86.	2019/10/10	Article	Clade II Candida auris possess genomic structural variations related to an ancestral strain PLoS One (Collaboration)
87.	2019/10/05	Article	Complete Genome Sequence of an Enterohemorrhagic Escherichia coli O111:H8 Strain Recovered from a Large Outbreak in Japan Associated with Consumption of Raw Beef Microbiol Resour Announc (Collaboration)
88.	2019/09/25	Article	Aseptic meningitis caused by torque teno virus in an infant: a case report J Med Case Rep (Collaboration)
89.	2019/09/08	Article	Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database Sci Rep (Collaboration)
90.	2019/09/03	Article	IS256-Mediated Overexpression of the WalKR Two-Component System Regulon Contributes to Reduced Vancomycin Susceptibility in a Staphylococcus aureus Clinical Isolate Front Microbiol (Collaboration)
91.	2019/08/28	Article	Rapid and affordable size-selected PacBio single-molecule real-time sequencing template library construction using the bead-beating DNA extraction method J Biol Methods (Collaboration)
92.	2019/08/16	Article	Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay Infect Drug Resist (Collaboration)
93.	2019/07/31	Article	The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids Sci Rep (Collaboration)
94.	2019/06/20	Article	Enterohaemorrhagic Escherichia coli O121:H19 acquired an extended-spectrum β-lactamase gene during the development of an outbreak in two nurseries Microb Genom (Collaboration)
95.	2019/06/19	Article	Salmonella Genomic Island 3 Is an Integrative and Conjugative Element and Contributes to Copper and Arsenic Tolerance of Salmonella enterica Antimicrob Agents Chemother (Collaboration)
96.	2019/05/24	Article	The R2TP complex regulates paramyxovirus RNA synthesis PLoS Pathog (Collaboration)
97.	2019/05/21	Article	A CRISPR Screen Using Subtilase Cytotoxin Identifies SLC39A9 as a Glycan-Regulating Factor iScience (Collaboration)
98.	2019/05/21	Article	Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan Environ Microbiol Rep (Collaboration)
99.	2019/03/01	Article	Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis PLoS One (Collaboration)
100.	2019/01/21	Article	A CRISPR Screen Identifies LAPTM4A and TM9SF Proteins as Glycolipid-Regulating Factors iScience (Collaboration)
101.	2019/01/09	Article	Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase Region in Norovirus Genogroup II Front Microbiol (Collaboration)
102.	2018/12/12	Article	The plasmid-encoded transcription factor ArdK contributes to the repression of the IMP-6 metallo-β-lactamase gene blaIMP-6, leading to a carbapenem-susceptible phenotype in the blaIMP-6-positive Escherichia coli strain A56-1S PLoS One (Collaboration)
103.	2018/12/08	Article	Complete Genome Sequence of bla (IMP-6)-Positive Metakosakonia sp. MRY16-398 Isolate From the Ascites of a Diverticulitis Patient Front Microbiol (Collaboration)
104.	2018/11/10	Article	Complete Genome Sequence and Characterization of Linezolid-Resistant Enterococcus faecalis Clinical Isolate KUB3006 Carrying a cfr(B)-Transposon on Its Chromosome and optrA-Plasmid Front Microbiol (Collaboration)
105.	2018/11/10	Article	Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection Hum Mol Genet (Collaboration)
106.	2018/11/02	Article	Study on the Outbreak of Human Rhinovirus Species C Infection in a Welfare Facility in Fukuoka Prefecture, Japan Jpn J Infect Dis (Collaboration)
107.	2018/10/22	Article	IncFII plasmid carrying antimicrobial resistance genes in Shigella flexneri: Vehicle for dissemination J Glob Antimicrob Resist (Collaboration)
108.	2018/10/13	Article	Emergence of an Escherichia coli strain co-harbouring mcr-1 and bla(NDM-9) from a urinary tract infection in Taiwan J Glob Antimicrob Resist (Collaboration)
109.	2018/10/13	Article	Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii Sci Rep (Collaboration)
110.	2018/09/21	Article	Complete Genome Sequence of a bla(KPC-2)-Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan mSphere (Collaboration)
111.	2018/08/18	Article	Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria Gut Microbes (Collaboration)
112.	2018/08/17	Article	Next-generation DNA sequencing analysis of two Streptococcus suis ST28 isolates associated with human infective endocarditis and meningitis in Gunma, Japan: a case report Infect Dis (Lond) (Collaboration)
113.	2018/07/31	Article	FRI-4 carbapenemase-producing Enterobacter cloacae complex isolated in Tokyo, Japan J Antimicrob Chemother (Collaboration)
114.	2018/07/22	Article	Infection of Epstein⁻Barr Virus in Type III Latency Modulates Biogenesis of Exosomes and the Expression Profile of Exosomal miRNAs in the Burkitt Lymphoma Mutu Cell Lines Cancers (Basel) (Collaboration)
115.	2018/07/07	Article	Prevention of aerosol isolation of nontuberculous mycobacterium from the patient's bathroom ERJ Open Res (Collaboration)
116.	2018/06/01	Article	Erratum: AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica PLoS Pathog (Collaboration)
117.	2018/05/11	Article	Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance Environ Int (Collaboration)
118.	2018/04/08	Article	Decrease in the prevalence of extended-spectrum cephalosporin-resistant Salmonella following cessation of ceftiofur use by the Japanese poultry industry Int J Food Microbiol (Collaboration)
119.	2018/03/20	Article	AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica PLoS Pathog (Collaboration)
120.	2018/03/02	Article	Phylogenetic Characterization of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades J Clin Microbiol (Collaboration)
121.	2018/02/07	Article	Detailed genetic analyses of the HN gene in human respirovirus 3 detected in children with acute respiratory illness in the Iwate Prefecture, Japan Infect Genet Evol (Collaboration)
122.	2018/02/07	Article	Genetic Analysis of Human Norovirus Strains in Japan in 2016-2017 Front Microbiol (Collaboration)
123.	2018/02/03	Article	A summary of the imported cases of Chikungunya fever in Japan from 2006 to June 2016 J Travel Med (Collaboration)
124.	2018/01/14	Article	Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a human vaccine cell substrate Sci Rep (Collaboration)
125.	2017/12/28	Article	Isolation and Complete Genome Sequencing of Zika Virus Imported from the Dominican Republic to Japan Jpn J Infect Dis (Collaboration)
126.	2017/12/21	Article	Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015 Front Microbiol (Collaboration)
127.	2017/12/21	Article	Phylogeny and Immunoreactivity of Norovirus GII.P16-GII.2, Japan, Winter 2016-17 Emerg Infect Dis (Collaboration)
128.	2017/12/20	Article	Streptococcal toxic shock syndrome caused by the dissemination of an invasive emm3/ST15 strain of Streptococcus pyogenes BMC Infect Dis (Collaboration)
129.	2017/12/08	Article	Characterization of Fusobacterium varium Fv113-g1 isolated from a patient with ulcerative colitis based on complete genome sequence and transcriptome analysis (Collaboration)
130.	2017/09/02	Article	Interleukin-6-dependent growth in a newly established plasmablastic lymphoma cell line and its therapeutic targets Sci Rep (Collaboration)
131.	2017/08/18	Article	Analysis of multidrug resistant group B streptococci with reduced penicillin susceptibility forming small, less hemolytic colonies PLoS One (Collaboration)
132.	2017/07/14	Article	Proviral Features of Human T Cell Leukemia Virus Type 1 in Carriers with Indeterminate Western Blot Analysis Results J Clin Microbiol (Collaboration)
133.	2017/06/17	Article	Complete Genome Sequences of the p1 Gene Type 2b and 2c Strains Mycoplasma pneumoniae KCH-402 and KCH-405 Genome Announc (Collaboration)
134.	2017/05/06	Article	A Geographically Widespread Outbreak Investigation and Development of a Rapid Screening Method Using Whole Genome Sequences of Enterohemorrhagic Escherichia coli O121 Front Microbiol (Collaboration)
135.	2017/05/06	Article	Comprehensive Diagnosis of Bacterial Infection Associated with Acute Cholecystitis Using Metagenomic Approach Front Microbiol (Collaboration)
136.	2017/04/27	Article	Effects of Flavonoids and Triterpene Analogues from Leaves of Eleutherococcus sieboldianus (Makino) Koidz. 'Himeukogi' in 3T3-L1 Preadipocytes Molecules (Collaboration)
137.	2017/04/21	Article	Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids Sci Rep (Collaboration)
138.	2017/04/18	Article	Molecular evolution of the fusion protein (F) gene in human respiratory syncytial virus subgroup B Infect Genet Evol (Collaboration)
139.	2017/03/29	Article	Comprehensive pathogen detection associated with four recurrent episodes of Kawasaki disease in a patient during a single year using next-generation sequencing JMM Case Rep (Collaboration)
140.	2017/03/08	Article	Genetic analyses of the fusion protein genes in human parainfluenza virus types 1 and 3 among patients with acute respiratory infections in Eastern Japan from 2011 to 2015 J Med Microbiol (Collaboration)
141.	2017/02/14	Article	Comparative genome analysis of VSP-II and SNPs reveals heterogenic variation in contemporary strains of Vibrio cholerae O1 isolated from cholera patients in Kolkata, India PLoS Negl Trop Dis (Collaboration)
142.	2017/02/10	Article	Next-generation sequencing of miRNAs in clinical samples of Epstein-Barr virus-associated B-cell lymphomas Cancer Med (Collaboration)
143.	2016/12/24	Article	Utilizing the Carba NP test as an indicator of expression level of carbapenemase genes in Enterobacteriaceae (Collaboration)
144.	2016/11/30	Article	Characterization of the Pathogenicity of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess Based on the Complete Genome Sequence with Transcriptome Analysis and Transposon Mutagenesis in a Murine Subcutaneous Abscess Model Infect Immun (Collaboration)
145.	2016/11/18	Article	Prevalence of Colistin Resistance Gene mcr-1 and Absence of mcr-2 in Escherichia coli Isolated from Healthy Food-Producing Animals in Japan Antimicrob Agents Chemother (Collaboration)
146.	2016/11/01	Article	Deep-Sequence Identification and Role in Virus Replication of a JC Virus Quasispecies in Patients with Progressive Multifocal Leukoencephalopathy J Virol (Collaboration)
147.	2016/09/10	Article	Profile of Exosomal and Intracellular microRNA in Gamma-Herpesvirus-Infected Lymphoma Cell Lines PLoS One (Collaboration)
148.	2016/08/19	Article	Establishing and characterizing a new primary effusion lymphoma cell line harboring Kaposi's sarcoma-associated herpesvirus Infect Agent Cancer (Collaboration)
149.	2016/07/23	Article	Correction for Rimbara et al., Draft Genome Sequence of Helicobacter fennelliae Strain MRY12-0050, Isolated from a Bacteremia Patient Genome Announc (Collaboration)
150.	2016/07/19	Article	Pathogen profiles and molecular epidemiology of respiratory viruses in Japanese inpatients with community-acquired pneumonia Respir Investig (Collaboration)
151.	2016/07/08	Article	Molecular evolution of the capsid gene in human norovirus genogroup II Sci Rep (Collaboration)
152.	2016/07/05	Article	DGV: Dengue Genographic Viewer Front Microbiol (Collaboration)
153.	2016/06/22	Article	Repeated fecal microbiota transplantation in a child with ulcerative colitis Pediatr Int (Collaboration)
154.	2016/06/14	Article	Molecular evolution of the fusion protein gene in human respiratory syncytial virus subgroup A Infect Genet Evol (Collaboration)
155.	2016/05/28	Article	Two different dengue virus strains in the Japanese epidemics of 2014 Virus Genes (Collaboration)
156.	2016/05/19	Article	Possible Case of Novel Spotted Fever Group Rickettsiosis in Traveler Returning to Japan from India Emerg Infect Dis (Collaboration)
157.	2016/04/27	Article	Evaluation of Vero-cell-derived simian endogenous retrovirus infection in humans by detection of viral genome in clinicopathological samples and commercialized vaccines and by serology of Japanese general population Vaccine (Collaboration)
158.	2016/04/17	Article	tRNA-Dependent Aminoacylation of an Amino Sugar Intermediate in the Biosynthesis of a Streptothricin-Related Antibiotic Appl Environ Microbiol (Collaboration)
159.	2016/03/19	Article	Acute encephalopathy in an immunocompromised boy with astrovirus-MLB1 infection detected by next generation sequencing J Clin Virol (Collaboration)
160.	2016/03/09	Article	Distribution and Relationships of Antimicrobial Resistance Determinants among Extended-Spectrum-Cephalosporin-Resistant or Carbapenem-Resistant Escherichia coli Isolates from Rivers and Sewage Treatment Plants in India Antimicrob Agents Chemother (Collaboration)
161.	2016/02/13	Article	VirusTAP: Viral Genome-Targeted Assembly Pipeline Front Microbiol (Collaboration)
162.	2016/01/18	Article	Investigation of a plasmid genome database for colistin-resistance gene mcr-1 Lancet Infect Dis (Collaboration)
163.	2015/11/14	Article	TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing PLoS One (Collaboration)
164.	2015/09/27	Article	Molecular evolution of the hypervariable region of the attachment glycoprotein gene in human respiratory syncytial virus subgroup B genotypes BA9 and BA10 Infect Genet Evol (Collaboration)
165.	2015/09/05	Article	Molecular Evolution of the Capsid Gene in Norovirus Genogroup I Sci Rep (Collaboration)
166.	2015/09/01	Article	Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis Front Microbiol (Collaboration)
167.	2015/08/14	Article	Capsule Switching and Antimicrobial Resistance Acquired during Repeated Streptococcus pneumoniae Pneumonia Episodes J Clin Microbiol (Collaboration)
168.	2015/07/18	Article	Identification of ribonucleotide reductase mutation causing temperature-sensitivity of herpes simplex virus isolates from whitlow by deep sequencing Clin Case Rep (Collaboration)
169.	2015/07/07	Article	The Mitochondrial Genomes of a Myxozoan Genus Kudoa Are Extremely Divergent in Metazoa PLoS One (Collaboration)
170.	2015/07/02	Article	Molecular evolution of haemagglutinin (H) gene in measles virus Sci Rep (Collaboration)
171.	2015/03/28	Article	GcoGSA-BA: a global core genome SNP analysis for Bacillus anthracis Health Secur (Collaboration)
172.	2015/02/26	Article	Extensive amplification of GI-VII-6, a multidrug resistance genomic island of Salmonella enterica serovar Typhimurium, increases resistance to extended-spectrum cephalosporins Front Microbiol (Collaboration)
173.	2015/02/14	Article	Complete Genome Sequence of a Novel GV.2 Sapovirus Strain, NGY-1, Detected from a Suspected Foodborne Gastroenteritis Outbreak Genome Announc (Collaboration)
174.	2015/02/13	Article	A mutant H3N2 influenza virus uses an alternative activation mechanism in TMPRSS2 knockout mice by loss of an oligosaccharide in the hemagglutinin stalk region J Virol (Collaboration)
175.	2015/02/13	Article	New validated rapid screening methods for identifying Kudoa septempunctata in olive flounder (Paralichthys olivaceus) Jpn J Infect Dis (Collaboration)
176.	2015/02/03	Article	Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C Sci Rep (Collaboration)
177.	2015/01/28	Article	Outbreak of henipavirus infection, Philippines, 2014 Emerg Infect Dis (Collaboration)
178.	2014/12/16	Article	Complete genome sequence and comparative genomic analysis of Mycobacterium massiliense JCM 15300 in the Mycobacterium abscessus group reveal a conserved genomic island MmGI-1 related to putative lipid metabolism PLoS One (Collaboration)
179.	2014/12/02	Article	Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis Pathogens (Collaboration)
180.	2014/11/26	Article	Isolation and characterization of an Huh.7.5.1-derived cell clone highly permissive to hepatitis C virus Jpn J Infect Dis (Collaboration)
181.	2014/10/11	Article	Draft Genome Sequence of Rhodococcus erythropolis JCM 6824, an Aurachin RE Antibiotic Producer Genome Announc (Collaboration)
182.	2014/10/07	Article	Molecular evolution of human respiratory syncytial virus attachment glycoprotein (G) gene of new genotype ON1 and ancestor NA1 Infect Genet Evol (Collaboration)
183.	2014/10/01	Article	The genome landscape of the african green monkey kidney-derived vero cell line DNA Res (Collaboration)
184.	2014/09/24	Article	Characterization of blaTEM-52-carrying plasmids of extended-spectrum-β-lactamase-producing Salmonella enterica isolates from chicken meat with a common supplier in Japan Antimicrob Agents Chemother (Collaboration)
185.	2014/09/09	Article	Detection of trichodysplasia spinulosa-associated polyomavirus in a fatal case of myocarditis in a seven-month-old girl Int J Clin Exp Pathol (Collaboration)
186.	2014/09/07	Article	Genetic characterization and comparison of Clostridium botulinum isolates from botulism cases in Japan between 2006 and 2011 Appl Environ Microbiol (Collaboration)
187.	2014/07/26	Article	Whole-Genome Sequence of CMY-2 β-Lactamase-Producing Salmonella enterica Serovar Typhimurium Strain L-3553 Genome Announc (Collaboration)
188.	2014/07/25	Article	An outbreak of acute respiratory infections due to human respiratory syncytial virus in a nursing home for the elderly in Ibaraki, Japan, 2014 Jpn J Infect Dis (Collaboration)
189.	2014/07/22	Article	A food-borne outbreak of gastroenteritis due to genotype G1P[8] rotavirus among adolescents in Japan Microbiol Immunol (Collaboration)
190.	2014/04/22	Article	Amoebal endosymbiont Neochlamydia genome sequence illuminates the bacterial role in the defense of the host amoebae against Legionella pneumophila PLoS One (Collaboration)
191.	2014/02/22	Article	Role of pathogenicity determinant protein C (PdpC) in determining the virulence of the Francisella tularensis subspecies tularensis SCHU PLoS One (Collaboration)
192.	2014/01/24	Article	MePIC, metagenomic pathogen identification for clinical specimens Jpn J Infect Dis (Collaboration)
193.	2013/12/21	Article	The V protein of canine distemper virus is required for virus replication in human epithelial cells PLoS One (Collaboration)
194.	2013/11/16	Article	Genetic variation of human papillomavirus type 16 in individual clinical specimens revealed by deep sequencing PLoS One (Collaboration)
195.	2013/11/08	Article	Discrimination of Mycobacterium abscessus subsp. massiliense from Mycobacterium abscessus subsp. abscessus in clinical isolates by multiplex PCR J Clin Microbiol (Collaboration)
196.	2013/08/10	Article	Draft Genome Sequence of Helicobacter fennelliae Strain MRY12-0050, Isolated from a Bacteremia Patient Genome Announc (Collaboration)
197.	2013/06/25	Article	Epidemic myalgia associated with human parechovirus type 3 infection among adults occurs during an outbreak among children: findings from Yamagata, Japan, in 2011 J Clin Virol (Collaboration)
198.	2013/06/12	Article	Genetic analysis of attachment glycoprotein (G) gene in new genotype ON1 of human respiratory syncytial virus detected in Japan Microbiol Immunol (Collaboration)
199.	2013/05/28	Article	Molecular evolution of attachment glycoprotein (G) gene in human respiratory syncytial virus detected in Japan 2008-2011 Infect Genet Evol (Collaboration)
200.	2013/02/15	Article	Protochlamydia induces apoptosis of human HEp-2 cells through mitochondrial dysfunction mediated by chlamydial protease-like activity factor PLoS One (Collaboration)
201.	2012/12/05	Article	Molecular evolution of hemagglutinin (H) gene in measles virus genotypes D3, D5, D9, and H1 PLoS One (Collaboration)
202.	2012/11/24	Article	Canine distemper virus with the intact C protein has the potential to replicate in human epithelial cells by using human nectin4 as a receptor Virology (Collaboration)
203.	2012/11/09	Article	Genetic analysis of non-hydrogen sulfide-producing Salmonella enterica serovar typhimurium and S. enterica serovar infantis isolates in Japan J Clin Microbiol (Collaboration)
204.	2012/10/26	Article	Epidemic myalgia in adults associated with human parechovirus type 3 infection, Yamagata, Japan, 2008 Emerg Infect Dis (Collaboration)
205.	2012/10/17	Article	Pathogenic characterization of a cervical lymph node derived from a patient with Kawasaki disease Int J Clin Exp Pathol (Collaboration)
206.	2012/05/16	Article	Corynebacterium ulcerans 0102 carries the gene encoding diphtheria toxin on a prophage different from the C. diphtheriae NCTC 13129 prophage BMC Microbiol (Collaboration)
207.	2012/02/17	Article	Detection of a possible bioterrorism agent, Francisella sp., in a clinical specimen by use of next-generation direct DNA sequencing J Clin Microbiol (Collaboration)
208.	2012/01/28	Article	Identification of Kudoa septempunctata as the causative agent of novel food poisoning outbreaks in Japan by consumption of Paralichthys olivaceus in raw fish Clin Infect Dis (Collaboration)
209.	2011/10/04	Article	Complete sequencing of the bla(NDM-1)-positive IncA/C plasmid from Escherichia coli ST38 isolate suggests a possible origin from plant pathogens PLoS One (Collaboration)
210.	2011/06/29	Article	Characterization of Salmonella enterica serovar Typhimurium isolates harboring a chromosomally encoded CMY-2 beta-lactamase gene located on a multidrug resistance genomic island Antimicrob Agents Chemother (Collaboration)
211.	2011/03/25	Article	The impact of Saffold cardiovirus in patients with acute respiratory infections in Yamagata, Japan Scand J Infect Dis (Collaboration)
212.	2011/02/01	Article	Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci (Collaboration)
213.	2011/01/18	Article	Inhibition of Streptococcus mutans biofilm formation by Streptococcus salivarius FruA Appl Environ Microbiol (Collaboration)
214.	2010/11/25	Article	Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome Antimicrob Agents Chemother (Collaboration)
215.	2010/06/18	Article	Genome-wide single nucleotide polymorphism typing method for identification of Bacillus anthracis species and strains among B. cereus group species J Clin Microbiol (Collaboration)
216.	2010/04/30	Article	Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer PLoS One (Collaboration)
217.	2010/04/14	Article	Genomewide screening for novel genetic variations associated with ciprofloxacin resistance in Bacillus anthracis Antimicrob Agents Chemother (Collaboration)
218.	2010/01/23	Article	The first autopsy case of pandemic influenza (A/H1N1pdm) virus infection in Japan: detection of a high copy number of the virus in type II alveolar epithelial cells by pathological and virological examination Jpn J Infect Dis (Collaboration)
219.	2009/11/17	Article	Phylogenetic typing of Bacillus anthracis isolated in Japan by multiple locus variable-number tandem repeats and the comprehensive single nucleotide polymorphism J Vet Med Sci (Collaboration)
220.	2008/12/18	Article	Novel virus discovery in field-collected mosquito larvae using an improved system for rapid determination of viral RNA sequences (RDV ver4.0) Arch Virol (Collaboration)
221.	2008/11/06	Article	Staphylococcus aureus surface protein SasG contributes to intercellular autoaggregation of Staphylococcus aureus Biochem Biophys Res Commun (Collaboration)
222.	2008/09/06	Article	Electron microscopy and computational studies of Ebh, a giant cell-wall-associated protein from Staphylococcus aureus Biochem Biophys Res Commun (Collaboration)
223.	2008/08/01	Article	Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus J Biol Chem (Collaboration)
224.	2008/07/22	Article	Staphylococcus aureus giant protein Ebh is involved in tolerance to transient hyperosmotic pressure Biochem Biophys Res Commun (Collaboration)
225.	2008/06/10	Article	Expression, purification, crystallization and preliminary diffraction analysis of CapF, a capsular polysaccharide-synthesis enzyme from Staphylococcus aureus Acta Crystallogr Sect F Struct Biol Cryst Commun (Collaboration)
226.	2008/03/26	Article	Methicillin-resistant Staphylococcus saprophyticus isolates carrying staphylococcal cassette chromosome mec have emerged in urogenital tract infections Antimicrob Agents Chemother (Collaboration)
227.	2008/03/13	Article	A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus Structure (Collaboration)
228.	2007/08/08	Article	Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus Proteins (Collaboration)
229.	2007/06/15	Article	Sesquiterpene farnesol as a competitive inhibitor of lipase activity of Staphylococcus aureus FEMS Microbiol Lett (Collaboration)
230.	2007/02/20	Article	[Looking back one year after the start of "the model project on potentially therapeutic death" situation as a pathologist and organizer of Aichi area] Nihon Geka Gakkai Zasshi (Single)
231.	2007/02/01	Article	Subinhibitory concentrations of beta-lactam induce haemolytic activity in Staphylococcus aureus through the SaeRS two-component system FEMS Microbiol Lett (Collaboration)
232.	2007/01/24	Article	Sesquiterpene farnesol inhibits recycling of the C55 lipid carrier of the murein monomer precursor contributing to increased susceptibility to beta-lactams in methicillin-resistant Staphylococcus aureus J Antimicrob Chemother (Collaboration)
233.	2006/06/20	Article	[Whole genome sequence analysis reveals staphylococcal pathogenesis and antimicrobial resistance] Nihon Saikingaku Zasshi (Single)
234.	2006/05/16	Article	Evaluation of a cefoxitin disk diffusion test for the detection of mecA-positive methicillin-resistant Staphylococcus saprophyticus Int J Antimicrob Agents (Collaboration)
235.	2005/10/21	Article	Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species J Bacteriol (Collaboration)
236.	2005/09/02	Article	Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection Proc Natl Acad Sci U S A (Collaboration)
237.	2004/05/19	Article	Genome sequencing and annotation: an overview Methods Mol Biol (Collaboration)
238.	2004/05/15	Article	Nucleotide substitutions in Staphylococcus aureus strains, Mu50, Mu3, and N315 DNA Res (Collaboration)
239.	2003/07/17	Article	Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus Mol Microbiol (Collaboration)
240.	2003	Book	Chapter "Genome sequencing and annotation: an overview" in Genomics, Proteomincs　and Clinical Bacteriology. (Collaboration)
241.	2002/06/05	Article	Genome and virulence determinants of high virulence community-acquired MRSA Lancet (Collaboration)
242.	2002	Book	Application of Genomic Information to the Diagnosis, Management and Control of Bacterial Infections: Staphylococcus aureus model. Diagnostic Molecular Microbiology 2nd Ed. D. (Collaboration)
243.	2001/06/22	Article	Whole genome sequencing of meticillin-resistant Staphylococcus aureus Lancet (Collaboration)
244.	1999/05/06	Article	Chromosome-determined zinc-responsible operon czr in Staphylococcus aureus strain 912 Microbiol Immunol (Collaboration)
245.	1999/04/01	Article	The hsp operons are repressed by the hrc37 of the hsp70 operon in Staphylococcus aureus Microbiol Immunol (Collaboration)
246.	1996/09/24	Article	Atomic force microscopy proposes a novel model for stem-loop structure that binds a heat shock protein in the Staphylococcus aureus HSP70 operon Biochem Biophys Res Commun (Collaboration)
247.	1995/02/27	Article	Isolation and the gene cloning of an alkaline shock protein in methicillin resistant Staphylococcus aureus Biochem Biophys Res Commun (Collaboration)
248.	1994/08/01	Article	Molecular cloning of two new heat shock genes related to the hsp70 genes in Staphylococcus aureus J Bacteriol (Collaboration)
249.	1993/06/15	Article	Molecular characterization of the gene operon of heat shock proteins HSP60 and HSP10 in methicillin-resistant Staphylococcus aureus Biochem Biophys Res Commun (Collaboration)
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■ Selected Presentations

1.		A unique genome feature of an amoebal endosymbiotic primitive chlamydia, Neochlamydia, showing intimate mutualistic interaction with Acanthamoeba. (113th ASM general meeting.)
2.		An Alkaline Shock Protein and its Regulation in Staphylococcus aureus. (The 95th General Meeting of American Society for Microbiology,)
3.		An Alkaline Shock Protein and its Regulation in Staphylococcus aureus. (Stress Response and Molecular Chaperones, The 10th Rinshoken International Conference)
4.		Antimicrobial Susceptibility Profiles and PFGE Typing of Campylobacter jejuni Isolated from Various Sources in Japan. (the 16th International Workshop on Campylobacter, Helicobacter, and Related Organisms.)
5.		Characteristic SNPs in Mycobacterium leprae isolated in Japan. (The 18th International Leprosy Congress.)
6.		Department of Bacteriology, Juntendo University, Tokyo　National Institute of Technology and Evaluation, Sendai, (Comparative genomics and evolution of Staphylococcus aureus, epidermidis and haemolyticus Genomes 2004)
7.		Expression profiles of KSHV-encoded miRNAs in KSHV-associated diseases. (2012 International Congress on Oncogenic Herpesviruses and Associated Diseases.)
8.		Identification of the Up- and Down-Regulated Genes in Vancomycin-Resistant Staphylococcus aureus Starins Mu3 and Mu50 by cDNA differential Hybridization Method (The 9th International Symposium on Staphylococci and Staphylococcal Infections)
9.		Is1-mediated Horizontal Acquisition Of Multiple Antibiotics Resistance In Salmonella enterica Serovar Typhimurium.
10.		Longitudinal analysis of gut flora in Kawasaki disease patients using next generation DNA sequencing The 10th International Kawasaki Disease Symposium (第10回国際川崎病シンポジウム)
11.		Overexpression of sarA gene affects beta-lactam and glycopeptide susceptibility. (Gordon Research Conference on Staphylococcal Disease)
12.		Regulation of heat and metal responsible czr operon in Staphylococcus aureus. (International conference on dynamics and regulation of the stress response)
13.		The 10th International Kawasaki Disease Symposium (第10回国際川崎病シンポジウム)
14.		VraSR Two-component System Modulates the Expression of the Genes in Cell-Wall Biosynthesis Pathway Including Penicillin-Binding Protein 2 PBP2 and Monofunctional Glycosyltransferase SgtB of Staphylococcus aureus. (The 6th Japan-Korea International Symposium on Microbiology)
15.		VraSR Two-component System Modulates the Expression of the Genes in Cell-Wall Biosynthesis Pathway IncludingPenicillin-Binding Protein 2 PBP2 and Monofunctional Glycosyltransferase SgtB of Staphylococcus aureus. (The 10th International Symposium on Staphylococci and Staphylococcal Infections)
16.	2022/09	Effectiveness of Enhanced Active Case Finding and Self-isolation in the Early Phase of SARS-CoV-2 B.1.1.529 (Omicron) (variant Transmission - Osaka, Japan, December 2021-January 2022. 11th Global Scientific Conference)
17.	2019/09	CHARACTERIZATION OF THE CYTOTOXICITY BY STREPTOCOCCUS INTERMEDIUS TYPE SEVEN SECRETION SYSTEM. (MICROBIAL PATHOGENESIS & HOST RESPONSE)
18.	2019/08	Genome-wide CRISPR screens identify novel glycan regulators. (25th International Symposium on Glycoconjugates)
19.	2018/10	A prolonged multispecies outbreak of carbapenemase-producing Enterobacteriaceae due to transmissible plasmid with carbapenemase gene. (ID week 2018)
20.	2018/09	Complete genome sequence of a blaKPC-2-positive Klebsiella pneumoniae strain isolated from the effluent of an urban sewage treatment plant in Japan. (ESCMID/ASM Conference on Drug Development to Meet the Challenge of Antimicrobial Resistance)
21.	2018/09	Growth Inhibition of Streptococcaceae in Healthy Gut Flora by Interocin of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess. (ESCMID/ASM Conference on Drug Development to Meet the Challenge of Antimicrobial Resistance)
22.	2018/09	Whole genome analysis of clostridioides difficile strains isolated from horses in Japan. (6th International Clostridium difficile Symposium)
23.	2018/08	The maintenance of antimicrobial resistance genes by multireplicon IncF plasmid F1:A2:B20 in epidemic clone Escherichia coli ST131. (Plasmid Biology 2018)
24.	2018/05	EHEC Working Group Applicability of whole genome sequencing of enterohemorrhagic Escherichia coli O111 in the national surveillance. (VTEC2018 10th International Symposium)
25.	2017/11	Antimicrobial Resistance Genetic Marker Prediction for Mycobacterium tuberculosis. (International Congress of Chemotherapy and Infection 2017 (ICC 2017))
26.	2017/10	Characterization of gut microbiome associated with improvement of ulcerative colitis after antibiotic combination therapy using fecal full metagenomic analysis. (25th United European Gastroenterology Week (UEGW2017))
27.	2017/10	Transcriptional factor ArdK on IncN plasmid contributes to the repression of blaIMP-6 in concealed-type carbapenem-susceptible Escherichia coli. (Keystone Symposia Conference T4: Antimicrobials and Resistance: Opportunities and Challenges)
28.	2017/05	Spreading of the blaCTX-M-8 carrying plasmid in human was mediated by its possessed Escherichia coli contaminated chicken meat; a public health concern. (13th beta-lactamase meeting)
29.	2017/03	Genomic feature of HTLV-1 in Western blot indeterminate. (18th International Conference on Human Retrovirology HTLV and Related Viruses)
30.	2016/12	DGV: Dengue Genographic Viewer. (Joint International Tropical Medicine Meeting 2016 JITMM2016)
31.	2016/10	Application of genome editing technologies for studies on sphingolipid and glycan metabolisms. (EMBO Workshop “Glycosylation in the Golgi complex”)
32.	2016/08	Comparative genome analysis of Staphylococcal Cassette Chromosome (SCC) elements among Staphylococcus saprophyticus, causative agent of uncomplicated urinary tract infections. (17th International Symposium on Staphylococci and Staphylococcal Infections (ISSSI))
33.	2016/07	Visualizing genotype distribution of dengue virus. (The 11th China-Japan International Conference of Virology)
34.	2016/05	Genomic epidemiology of Clostridium botulinum isolates from Japanese Botulism Cases. (9th Meeting on Global Microbial Identifier (GMI))
35.	2016	GenEpid-J: an integrated database of pathogen genomics and epidemiology focused on plasmids involving in the antimicrobial resistance. (Plasmid Biology 2016)
36.	2015/09	Geographical view of dengue genotype distribution. DENGUE SURVEILLANCE: (INFORMATION-SHARING AMONG ASIAN COUNTRIES FOR A BETTER PREPARED REGION)
37.	2015/09	TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis using short-read whole-genome sequencing. (1st ASM Conference on Rapid NGS Bioinformatic Pipelines for Enhanced Molecular Epidemiologic Investigation of Pathogens)
38.	2015/05	TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis using short-read whole-genome sequencing. (8th Meeting on Global Microbial Identifier (GMI))
39.	2015/02	Human oral, gut and blood microbiota in patients with Kawasaki disease. (International Kawasaki Disease Symposium 2015)
40.	2014/09	Comparison of genome sequences between Mycobacterium leprae prepared before and after passaging in nude mice footpad. (The Join Meeting The XVIII International Symposium on Gnotobiology (XVIII-ISG) III International Ecologic Forum “Environment and human health” (EcoForum))
41.	2014/09	Isolation and Characterization of A Huh.7.5.1-Derived Cell Clone Highly Permissive to Hepatitis C Virus. (HCV meeting 2014)
42.	2014/07	TMPRSS2 is essential for influenza virus replication in vivo. (International Union of Microbiological Societies (IUMS 2014))
43.	2014/03/25	Makoto Kuroda. Metagenomic analysis for the clinical investigation of possible pathogens. (The 12th Japan-Korea International Symposium on Microbiology (XII-JKISM).)
44.	2011/09	A comprehensive and quantitative 16S ribosomal DNA deep-sequencing analysis for microbiota using next-generation sequencer. (IUMS 2011)
45.	2011/09	Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome. (IUMS 2011)
46.	2011/05	A Comprehensive And Quantitative 16S rDNA Deep-sequencing Analysis For Microbial Flora Using Next-generation Sequencer. (111th American Society for Microbiology)
47.	2011/05	Characterization of Quasispecies of Pandemic 2009 Influenza A Virus (A/H1N1/2009) by de novo Sequencing using a Next-generation DNA Sequencer. (111th American Society for Microbiology)
48.	2009/08	Discovery of secondary metabolite biosynthetic genes in Nocardia brasiliensis by genome scanning with next generation sequencer. (The 15th International Symposium on the Biology of Actinomycetes (ISBA’15).)
49.	2008/06	Methicillin-Resistant Staphylococcus saprophyticus Carrying Staphylococcal Cassette Chromosome mec (SCCmec) Have Emerged in Urogenital Tract Infections. (108th ASM general meeting.)
50.	2007/09	In vivo expression of cell surface proteins in Staphylococcus aureus. (Gordon Research Conference, staphylococcal diseases.)
51.	2007/09	In vivo expression of cell surface proteins in Staphylococcus aureus. (Gordon Research Conference, staphylococcal diseases.)
52.	2007/05	Sanae Nagasaki and Toshiko Ohta. Sesquiterpene Farnesol Affects Lipase Activity of Staphylococcus aureus as a Competitive Inhibitor. (107th ASM general meeting.)
53.	2007/05	Staphylococcus aureus surface protein SasG contributes to intercellular adhesion and biofilm formation. (107th ASM general meeting.)
54.	2006/09	Sesquiterpene Farnesol Increases the Susceptibility to beta-Lactams due to the Inhibition of Lipid Carrier Synthesis in Methicillin-Resistant Staphylococcus aureus. (46th ICAAC annual meeting.)
55.	2005/06	Complete Genome Sequence of Uropathogenic Bacteria Staphylococcus saprophyticus. (105th ASM general meeting)
56.	2005/06	Evaluation of a cefoxitin 30 µg disc diffusion test for detection of the mecA-positive methicillin-resistant Staphylococcus saprophyticus. (105th ASM general meeting)
57.	2004/08	Genome Structure of Uropathogenic Staphylococcus saprophyticus　Molecular Genetics of Bacteria & Phages, CSHL, 2004 Aug.
58.	2004	Frequent Acquisition of Methicillin-Resistance in Clinical Isolates of Uropathogenic Staphylococcus saprophyticus, and structure of its mecA region. Molecular Genetics of Bacteria and Phages meeting 200 Aug.CSHL
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